PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HB-other
Protein Properties Length: 193aa    MW: 21025.9 Da    PI: 8.0463
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13790genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-0713542556
                --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
    Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                p +e++  LA+k            ++ +qV +WFqNrR+ ++
  PEQU_13790 13 PAREMICALAEKFsastaragktAVQPKQVWNWFQNRRYSQR 54
                666677777777777777777779***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.685156IPR001356Homeobox domain
CDDcd000865.63E-4554No hitNo description
Gene3DG3DSA:1.10.10.602.4E-5958IPR009057Homeodomain-like
SuperFamilySSF466891.37E-8956IPR009057Homeodomain-like
PfamPF000466.1E-51354IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESCLQILRN AIPAREMICA LAEKFSASTA RAGKTAVQPK QVWNWFQNRR YSQRAKVKVP  60
VNQTIPPPVT RDDSVQFRNV VQPISIPQGV PQGQNSVEIS QLEFEAKSAR DGAWYDVSGF  120
LSHRKIETDD PEGEDPPLGG NSSPPLDRSA LAVALLSQFC ALQPVQPPID LASVSRVGGA  180
LALFVEAFGS SLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805942.15e-52PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X5
RefseqXP_008805941.15e-52PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X5
RefseqXP_008805940.17e-52PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X4
RefseqXP_008805938.18e-52PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ79e-33SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM0SQ082e-48M0SQ08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P18450_0014e-48(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.33e-34sequence-specific DNA binding transcription factors;sequence-specific DNA binding